PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002061-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 380aa    MW: 40821.4 Da    PI: 6.6429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002061-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.1e-16216262455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  NNU_002061-RA 216 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 262
                    6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-20209272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-20209272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.66E-18215266No hitNo description
PfamPF000102.4E-13216262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MADMYEKTCS SLPPPSSSPT PTPPSRPAVE SDDISLFLRH FLHSSSSSSA CMSDRSNQMP  60
FSSSSLSAPA PPAFFSSSPL TTSKALPEHP HHPYGSSLPF DSADCRVRNG TSNSKVESSG  120
VAVSSSSSFI FSSSGLCFPS EAKEKATITT SVGTADCDDV TATAKQRKSP LDNDLDDYEC  180
ESEEGLETSE EPSKPMPPRS TSSSSSSSKR SRAAEVHNLS EKRRRSRINE KMKALQNLIP  240
NSNKTDKASM LDEAIEYLKQ LQLQVQMLSM RNGLSLHPVY LPGVLQPIPL PQVPMDFSGG  300
SGSLHMTAGT STLPMNQETS TRMAFSLPNQ CTSSHQPVVL PSMTNISNSE TSFGIGSSHQ  360
AHHGPFLFSS SKLGDQKYVT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6796154e-64AY679615.1 Fragaria x ananassa basic helix-loop-helix protein mRNA, partial cds.
GenBankKP6894114e-64KP689411.1 Prunus pseudocerasus isolate Unigene12366 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270226.10.0PREDICTED: transcription factor SPATULA isoform X1
TrEMBLE0CPT41e-90E0CPT4_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g10270.t013e-90(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-39bHLH family protein